Your biochemical analysis utility

ProtMate™ is a small application for performing biochemical and proteomic calculations and analyses. Our primary intention for ProtMate to be used as an aid in undertaking chemical and biochemical calculations in a laboratory setting.

An integrated interface provides for easy access to all features of this program. Binaries for the GUI and command-line driven version of ProtMate are available for Macintosh OS X (10.6 and above) and Linux (kernel 2.6.15 and later). A GUI-version is available for Microsoft Windows (requires the .Net framework (ver 4.5 or later)).

Protmate is available free-of charge to students, academic researchers and researchers at non-profit institutions (please use your institutional e-mail address (.edu, .org,, etc.) to register the software). If you wish to use ProtMate for commercial research (including consulting), please contact us (using the ‘Contact Us’ link in the toolbar) for terms of use and licensing.

ProtMate runs in Windows, Mac OS X and Linux. OS X and Linux users also have access to the ProtMate command line tools.

The following versions of Windows are supported by PrtoMate: Windows 8 or newer

The following versions of OS X are supported by ProtMate: OS X 10.9 (Mavericks) or newer

ProtMate Changelog

2015-02-19 Version released

  • Fixed a bug in the Windows version that caused ProtMate analysis windows to appear behind the main window.